Pseudomonas syringae pv. atrofaciens strain ICMP 1852

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas syringae pv. atrofaciens strain ICMP 1852 is a Gram-negative, rod-shaped bacterium characterized as a heterotrophic aerobe. This strain exhibits mobility, facilitated by the presence of flagella, and typically exists as single cells rather than in clusters. It is classified as mesophilic, indicating that it thrives within moderate temperature ranges. The organism has a complex cellular structure, with two membranes surrounding its cytoplasm and a single replicon in its genetic makeup. Its free-living nature suggests that it can survive independently in various habitats, contributing to its ecological versatility. Pseudomonas syringae species, including strain ICMP 1852, are known for their role in plant pathology and are often involved in interactions with plant hosts. Understanding the ecological roles and environmental adaptability of this strain can inform its potential applications in agriculture and biotechnology, particularly in developing strategies for disease management. The diverse habitats in which it can be found underscore its ecological significance and potential impact on plant health and agricultural practices.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas syringae
Strainpv. atrofaciens strain ICMP 1852

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pseudomonas syringae pv. atrofaciens strain ICMP 1852
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceHeterotroph
PathogenicityNot Available

Genome Summary

Pseudomonas syringae pv. atrofaciens strain ICMP 1852

Gene Summary

Adenine Count

1206902 bp

Thymine Count

1195914 bp

Guanine Count

1727068 bp

Cytosine Count

1734779 bp

Genome Length

5948024 bp

Protein-coding Genes

5336 genes

Non-Coding Genes

142 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
metal ion abc-type transport system, atp-binding proteinALQ20_02638Not AvailablePositive2191618 - 219236426938.4
abc-3-like proteinALQ20_102362Not AvailablePositive2192628 - 219323021228.8
metal ion abc-type transport system, periplasmic substrate-binding proteinALQ20_02639Not AvailablePositive2193242 - 219413832183.3
senescence marker protein-30ALQ20_02640Not AvailablePositive2195617 - 219648931534.2
l-arabinose-binding periplasmic protein arafALQ20_04893Not AvailablePositive2196686 - 219749928717.6
isocitrate dehydrogenaseALQ20_05273Not AvailableNegative2197500 - 219842533828.6
cold shock protein cspdALQ20_03629Not AvailableNegative2199001 - 219927610113.0
atp-dependent clp protease adapter protein clpsALQ20_03630Not AvailablePositive2199501 - 219986313573.2
atp-dependent clp protease, atp-binding subunit clpaALQ20_03631Not AvailablePositive2199894 - 220216783536.8
translation initiation factor if-1ALQ20_03632Not AvailableNegative2202280 - 22024988303.06

Displaying genes 2141 – 2150 of 5479 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.