Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas savastanoi |
| Strain | pv. retacarpa strain ICMP 16946 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 28 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Retama sphaerocarpa |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Heterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1199582 bp
Thymine Count
1199844 bp
Guanine Count
1660800 bp
Cytosine Count
1655145 bp
Genome Length
5771807 bp
Protein-coding Genes
5335 genes
Non-Coding Genes
78 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type iii secretion component protein hrcj | ALQ22_01881 | Not Available | Negative | 433284 - 433811 | 20228.1 |
| type iii secretion system lipoprotein | ALQ22_01882 | Not Available | Negative | 433811 - 434617 | 29253.6 |
| type iii secretion component protein hrpb | ALQ22_100253 | Not Available | Negative | 434626 - 435000 | 12866.3 |
| type iii secretion system helper protein | ALQ22_01883 | Not Available | Negative | 435028 - 436074 | 35407.4 |
| type iii secretion system pilin protein | ALQ22_01884 | Not Available | Negative | 436125 - 436451 | 11163.0 |
| type iii secretion system transcriptional regulator | ALQ22_01885 | Not Available | Negative | 436543 - 437451 | 33270.3 |
| membrane-bound lytic murein transglycosylase d | ALQ22_101711 | Not Available | Negative | 439505 - 440977 | 53803.4 |
| type iii effector | ALQ22_01886 | Not Available | Positive | 441187 - 444342 | 113466.0 |
| avirulence protein avrf | ALQ22_01887 | Not Available | Negative | 446399 - 446788 | 14339.1 |
| effector protein hopm1 | ALQ22_01888 | Not Available | Negative | 446866 - 448887 | 71106.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.







