Pseudomonas savastanoi pv. retacarpa strain ICMP 16946

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas savastanoi pv. retacarpa strain ICMP 16946 is a Gram-negative, rod-shaped bacterium characterized by its aerobic metabolism and heterotrophic energy source. This strain is free-living and typically found in multiple habitats. Its cell arrangement is primarily in singles, and it possesses flagella, which contributes to its mobility. The optimal growth temperature for this strain is 28°C, indicating that it thrives in mesophilic conditions. Pseudomonas savastanoi pv. retacarpa has a single replicon and is surrounded by two membranes, a characteristic feature of Gram-negative bacteria. This strain is known to interact with its host, Retama sphaerocarpa, causing the formation of knots in broom, which are galls that can affect the growth and health of the plant. The relationship between the bacterium and its host demonstrates the ecological implications of Pseudomonas savastanoi pv. retacarpa, as it can influence plant health and potentially affect local ecosystems. In summary, Pseudomonas savastanoi pv. retacarpa strain ICMP 16946 is a mobile, heterotrophic, and mesophilic bacterium that can interact negatively with its host plant, Retama sphaerocarpa, leading to observable plant deformities. This interaction highlights the ecological significance of this bacterium in its natural habitat.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas savastanoi
Strainpv. retacarpa strain ICMP 16946

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pseudomonas savastanoi pv. retacarpa strain ICMP 16946
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature28
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Retama sphaerocarpa
Cell arrangementSingles
SporulationNot Available
Energy sourceHeterotroph
PathogenicityNot Available

Genome Summary

Pseudomonas savastanoi pv. retacarpa strain ICMP 16946

Gene Summary

Adenine Count

1199582 bp

Thymine Count

1199844 bp

Guanine Count

1660800 bp

Cytosine Count

1655145 bp

Genome Length

5771807 bp

Protein-coding Genes

5335 genes

Non-Coding Genes

78 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
permease of the major facilitator superfamilyALQ22_01940Not AvailableNegative3173875 - 317508342346.0
cobalamin synthaseALQ22_01941Not AvailableNegative3175157 - 317590325731.3
alpha-ribazole-5'-phosphate phosphataseALQ22_01942Not AvailableNegative3175905 - 317647720750.0
nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferaseALQ22_01943Not AvailableNegative3176474 - 317752636224.9
adenosylcobinamide-phosphate guanylyltransferaseALQ22_01944Not AvailableNegative3177523 - 317804418959.2
cobyric acid synthaseALQ22_01945Not AvailableNegative3178045 - 317950552322.0
l-threonine 3-o-phosphate decarboxylaseALQ22_01946Not AvailableNegative3179502 - 317995117080.7
l-threonine 3-o-phosphate decarboxylaseALQ22_01947Not AvailableNegative3179954 - 318052020150.9
cobalamin biosynthesis protein cobdALQ22_01948Not AvailableNegative3180513 - 318142132829.7
blub family cobalamin biosynthesis proteinALQ22_01949Not AvailableNegative3181418 - 318206824139.4

Displaying genes 3071 – 3080 of 5413 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Knots in broomCausesPMC8815115

Displaying health effects 1 – 1 of 1 in total