Pseudomonas savastanoi pv. retacarpa strain ICMP 16946

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas savastanoi pv. retacarpa strain ICMP 16946 is a Gram-negative, rod-shaped bacterium characterized by its aerobic metabolism and heterotrophic energy source. This strain is free-living and typically found in multiple habitats. Its cell arrangement is primarily in singles, and it possesses flagella, which contributes to its mobility. The optimal growth temperature for this strain is 28°C, indicating that it thrives in mesophilic conditions. Pseudomonas savastanoi pv. retacarpa has a single replicon and is surrounded by two membranes, a characteristic feature of Gram-negative bacteria. This strain is known to interact with its host, Retama sphaerocarpa, causing the formation of knots in broom, which are galls that can affect the growth and health of the plant. The relationship between the bacterium and its host demonstrates the ecological implications of Pseudomonas savastanoi pv. retacarpa, as it can influence plant health and potentially affect local ecosystems. In summary, Pseudomonas savastanoi pv. retacarpa strain ICMP 16946 is a mobile, heterotrophic, and mesophilic bacterium that can interact negatively with its host plant, Retama sphaerocarpa, leading to observable plant deformities. This interaction highlights the ecological significance of this bacterium in its natural habitat.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas savastanoi
Strainpv. retacarpa strain ICMP 16946

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pseudomonas savastanoi pv. retacarpa strain ICMP 16946
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature28
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Retama sphaerocarpa
Cell arrangementSingles
SporulationNot Available
Energy sourceHeterotroph
PathogenicityNot Available

Genome Summary

Pseudomonas savastanoi pv. retacarpa strain ICMP 16946

Gene Summary

Adenine Count

1199582 bp

Thymine Count

1199844 bp

Guanine Count

1660800 bp

Cytosine Count

1655145 bp

Genome Length

5771807 bp

Protein-coding Genes

5335 genes

Non-Coding Genes

78 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinALQ22_100830Not AvailableNegative2372365 - 237285017279.8
hdts proteinALQ22_02999Not AvailableNegative2373225 - 237399528691.1
d,d-heptose 1,7-bisphosphate phosphataseALQ22_03000Not AvailableNegative2374061 - 237460619289.3
glycine--trna ligase beta subunitALQ22_03001Not AvailableNegative2374617 - 237667174856.9
glycyl-trna synthetase subunit alphaALQ22_03002Not AvailableNegative2376668 - 237767538361.4
dna-3-methyladenine glycosidase iALQ22_101636Not AvailablePositive2377618 - 237824723524.5
lipid a biosynthesis lauroyl acyltransferaseALQ22_03003Not AvailablePositive2378286 - 237917332593.9
gntr transcriptional regulatorALQ22_04961Not AvailablePositive2379237 - 237953511163.5
galactonate dehydrataseALQ22_02426Not AvailableNegative2379594 - 238074242182.6
2-dehydro-3-deoxyphosphogalactonate aldolaseALQ22_02427Not AvailableNegative2380796 - 238143122016.0

Displaying genes 2291 – 2300 of 5413 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Knots in broomCausesPMC8815115

Displaying health effects 1 – 1 of 1 in total