Pseudomonas savastanoi pv. retacarpa strain ICMP 16946

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas savastanoi pv. retacarpa strain ICMP 16946 is a Gram-negative, rod-shaped bacterium characterized by its aerobic metabolism and heterotrophic energy source. This strain is free-living and typically found in multiple habitats. Its cell arrangement is primarily in singles, and it possesses flagella, which contributes to its mobility. The optimal growth temperature for this strain is 28°C, indicating that it thrives in mesophilic conditions. Pseudomonas savastanoi pv. retacarpa has a single replicon and is surrounded by two membranes, a characteristic feature of Gram-negative bacteria. This strain is known to interact with its host, Retama sphaerocarpa, causing the formation of knots in broom, which are galls that can affect the growth and health of the plant. The relationship between the bacterium and its host demonstrates the ecological implications of Pseudomonas savastanoi pv. retacarpa, as it can influence plant health and potentially affect local ecosystems. In summary, Pseudomonas savastanoi pv. retacarpa strain ICMP 16946 is a mobile, heterotrophic, and mesophilic bacterium that can interact negatively with its host plant, Retama sphaerocarpa, leading to observable plant deformities. This interaction highlights the ecological significance of this bacterium in its natural habitat.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas savastanoi
Strainpv. retacarpa strain ICMP 16946

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pseudomonas savastanoi pv. retacarpa strain ICMP 16946
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature28
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Retama sphaerocarpa
Cell arrangementSingles
SporulationNot Available
Energy sourceHeterotroph
PathogenicityNot Available

Genome Summary

Pseudomonas savastanoi pv. retacarpa strain ICMP 16946

Gene Summary

Adenine Count

1199582 bp

Thymine Count

1199844 bp

Guanine Count

1660800 bp

Cytosine Count

1655145 bp

Genome Length

5771807 bp

Protein-coding Genes

5335 genes

Non-Coding Genes

78 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
putative potassium transport system protein kupALQ22_00078Not AvailablePositive1324408 - 132630368335.2
hypothetical proteinALQ22_00079Not AvailableNegative1326404 - 132697620872.8
hypothetical proteinALQ22_00080Not AvailableNegative1326966 - 132773627627.2
putative membrane proteinALQ22_00081Not AvailableNegative1327756 - 133038095777.0
hypothetical proteinALQ22_101507Not AvailableNegative1330802 - 13309695883.45
Trna-metNot AvailableNot AvailablePositive1330996 - 1331072Not Available
dna polymerase ivALQ22_100316Not AvailablePositive1331309 - 133239440013.1
putative lipoproteinALQ22_00082Not AvailableNegative1332435 - 133339135885.3
proline--trna ligaseALQ22_04124Not AvailableNegative1333457 - 133525366194.4
outer membrane porin, oprd familyALQ22_00084Not AvailableNegative1335350 - 133673249434.2

Displaying genes 1331 – 1340 of 5413 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Knots in broomCausesPMC8815115

Displaying health effects 1 – 1 of 1 in total