Pseudomonas amygdali pv. eriobotryae strain ICMP 4316

RodMotile

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas amygdali pv. eriobotryae strain ICMP 4316 is a gram-negative bacterium characterized by its rod shape and motility. This strain possesses a single replicon, which is indicative of its genomic structure. The accession number for this strain is RBPV00000000.1, providing a reference for further genomic studies and comparisons within the Pseudomonas genus. The classification of Pseudomonas amygdali pv. eriobotryae as a pathogen highlights its ecological role, particularly in relation to host plants, such as loquat (Eriobotrya japonica). Understanding the specific traits of this strain can help in developing strategies for managing diseases it may cause in agricultural settings. Its motility suggests an ability to spread within plant tissues or between plants, potentially contributing to its pathogenicity. Overall, the traits of this strain emphasize its significance in plant pathology, particularly in the context of crop health and management. Further research into its genetic and ecological interactions with host plants may provide insights into effective disease control measures.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas amygdali
Strainpv. eriobotryae strain ICMP 4316

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas amygdali pv. eriobotryae strain ICMP 4316
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas amygdali pv. eriobotryae strain ICMP 4316

Gene Summary

Adenine Count

1276635 bp

Thymine Count

1267512 bp

Guanine Count

1750759 bp

Cytosine Count

1755783 bp

Genome Length

6124465 bp

Protein-coding Genes

5854 genes

Non-Coding Genes

112 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
multidrug rnd efflux transporter, membrane fusion protein mdtaALQ39_00444Not AvailablePositive72807 - 7410846600.0
multidrug rnd efflux transporter, permease mdtbALQ39_00445Not AvailablePositive74105 - 77215111909.0
multidrug rnd efflux transporter, permease protein mdtcALQ39_00446Not AvailablePositive77212 - 7879856496.4
multidrug rnd efflux transporter, permease protein mdtcALQ39_00447Not AvailablePositive78780 - 8031856077.0
heavy metal rnd efflux outer membrane proteinALQ39_04640Not AvailablePositive80273 - 8178454579.6
ggdef domain/eal domain-containing proteinALQ39_04641Not AvailablePositive81785 - 8370469390.1
hypothetical proteinALQ39_04869Not AvailableNegative83705 - 8401511395.7
aromatic amino acid permeaseALQ39_01391Not AvailableNegative84050 - 8531846246.5
hypothetical proteinALQ39_04870Not AvailableNegative85452 - 857189457.35
pseudouridine synthaseALQ39_04871Not AvailableNegative85728 - 8615915459.5

Displaying genes 161 – 170 of 5967 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.