Pseudomonas cannabina strain ICMP 15201

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas cannabina strain ICMP 15201 is characterized by a single replicon, indicating a streamlined genomic structure that may contribute to its adaptability and efficiency in various environments. This strain is cataloged under the accession number RBPH00000000.1, which provides a unique identifier for researchers to access its genomic data and related information. The genetic makeup of Pseudomonas cannabina, including strain ICMP 15201, plays a crucial role in its ecological interactions and potential applications. The simplicity of having one replicon could suggest a focus on specific metabolic pathways or a capacity for rapid growth under certain conditions. Pseudomonas species are known for their versatility and ability to thrive in diverse habitats, often playing significant roles in soil health and plant interactions. This particular strain may be of interest for its potential contributions to plant health, particularly in agricultural contexts. The ecological insight gained from studying Pseudomonas cannabina strain ICMP 15201 could lead to advancements in sustainable agricultural practices, as strains within this genus are often explored for their abilities to promote plant growth or suppress plant pathogens. Understanding the genetic characteristics of this strain further enhances our knowledge of its ecological functions and potential benefits in agricultural ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas cannabina
Strainstrain ICMP 15201

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas cannabina strain ICMP 15201
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas cannabina strain ICMP 15201 PalICMP15201_Contig_206,

Gene Summary

Adenine Count

1223277 bp

Thymine Count

1237362 bp

Guanine Count

1761201 bp

Cytosine Count

1738435 bp

Genome Length

5983593 bp

Protein-coding Genes

4990 genes

Non-Coding Genes

139 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
alginate biosynthesis regulatory protein algrALQ53_00866Not AvailableNegative2245000 - 224574627828.8
histidine kinase internal regionALQ53_00867Not AvailableNegative2245743 - 224682540121.5
argininosuccinate lyaseALQ53_00868Not AvailablePositive2246960 - 224835451713.9
tim44-like domain-containing proteinALQ53_04272Not AvailableNegative2248415 - 224927731031.0
dna-dependent helicase iiALQ53_04273Not AvailableNegative2249489 - 225167281698.7
rpir family transcriptional regulatorALQ53_02408Not AvailablePositive2251966 - 225283231005.6
transcriptional regulator, lysr proteinALQ53_100674Not AvailableNegative2253116 - 225406635837.6
pyruvate carboxylase subunit aALQ53_02409Not AvailablePositive2254272 - 225568751949.4
pyruvate carboxylase subunit bALQ53_02410Not AvailablePositive2255699 - 225750765570.1
acetyltransferaseALQ53_02411Not AvailableNegative2257779 - 225844725199.8

Displaying genes 1991 – 2000 of 5131 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.