Pseudomonas coronafaciens pv. zizaniae strain ICMP 8941

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas coronafaciens pv. zizaniae strain ICMP 8941 is characterized by having a single replicon, indicating a streamlined genomic structure. The strain is catalogued under the accession number RBOZ00000000.1, which serves as a reference for its genomic data. As a member of the Pseudomonas genus, this strain is affiliated with various ecological roles, particularly in agricultural settings. Pseudomonas species are well-known for their versatility and adaptability, often participating in nutrient cycling and plant interactions. The specific pathovar designation, "pv. zizaniae," suggests a specialization in affecting certain plant hosts, likely within the Zizania genus, which includes wild rice species. This specialization may reflect an evolutionary adaptation to specific plant environments, leading to unique interactions and responses in the host. Understanding the traits of Pseudomonas coronafaciens pv. zizaniae strain ICMP 8941 contributes to knowledge about plant-associated bacteria and their roles in agriculture. Further exploration of its biological characteristics and ecological functions could provide insights into its potential applications in plant disease management or soil health enhancement.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas coronafaciens
Strainpv. zizaniae strain ICMP 8941

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas coronafaciens pv. zizaniae strain ICMP 8941
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas coronafaciens pv. zizaniae strain ICMP 8941

Gene Summary

Adenine Count

1200568 bp

Thymine Count

1187916 bp

Guanine Count

1633172 bp

Cytosine Count

1641582 bp

Genome Length

5673958 bp

Protein-coding Genes

4904 genes

Non-Coding Genes

123 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinALQ61_100721Not AvailableNegative4924606 - 492502815728.0
site-specific recombinase, phage integrase familyALQ61_01905Not AvailableNegative4925032 - 492708076915.5
hypothetical proteinALQ61_05000Not AvailableNegative4927080 - 492898472329.6
site-specific recombinase, phage integrase familyALQ61_01906Not AvailableNegative4928968 - 493045556989.4
atp-dependent helicase hrpbALQ61_01907Not AvailableNegative4930535 - 493136831779.2
atp-dependent helicase hrpbALQ61_01908Not AvailableNegative4931368 - 493301159392.3
pyridoxal-5'-phosphate-dependent enzyme, beta subunitALQ61_05002Not AvailableNegative4933182 - 493410833661.6
ser-trna deacylaseALQ61_100972Not AvailableNegative4935288 - 493579419151.2
serine o-acetyltransferaseALQ61_100985Not AvailableNegative4936079 - 49361923889.8
gntr family transcriptional regulator/aminotransferaseALQ61_01909Not AvailablePositive4936960 - 493830050034.1

Displaying genes 4401 – 4410 of 5027 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.