Pseudomonas coronafaciens pv. zizaniae strain ICMP 8941

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas coronafaciens pv. zizaniae strain ICMP 8941 is characterized by having a single replicon, indicating a streamlined genomic structure. The strain is catalogued under the accession number RBOZ00000000.1, which serves as a reference for its genomic data. As a member of the Pseudomonas genus, this strain is affiliated with various ecological roles, particularly in agricultural settings. Pseudomonas species are well-known for their versatility and adaptability, often participating in nutrient cycling and plant interactions. The specific pathovar designation, "pv. zizaniae," suggests a specialization in affecting certain plant hosts, likely within the Zizania genus, which includes wild rice species. This specialization may reflect an evolutionary adaptation to specific plant environments, leading to unique interactions and responses in the host. Understanding the traits of Pseudomonas coronafaciens pv. zizaniae strain ICMP 8941 contributes to knowledge about plant-associated bacteria and their roles in agriculture. Further exploration of its biological characteristics and ecological functions could provide insights into its potential applications in plant disease management or soil health enhancement.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas coronafaciens
Strainpv. zizaniae strain ICMP 8941

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas coronafaciens pv. zizaniae strain ICMP 8941
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas coronafaciens pv. zizaniae strain ICMP 8941

Gene Summary

Adenine Count

1200568 bp

Thymine Count

1187916 bp

Guanine Count

1633172 bp

Cytosine Count

1641582 bp

Genome Length

5673958 bp

Protein-coding Genes

4904 genes

Non-Coding Genes

123 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
glycerophosphoryl diester phosphodiesteraseALQ61_04299Not AvailableNegative4548786 - 454954727837.5
glycerol-3-phosphate abc transporter atp-binding proteinALQ61_04300Not AvailableNegative4549554 - 455066039830.7
glycerol-3-phosphate abc transporter permeaseALQ61_04301Not AvailableNegative4550657 - 455155032492.6
glycerol-3-phosphate abc transporter, permease proteinALQ61_04302Not AvailableNegative4551547 - 455244032263.3
glycerol-3-phosphate abc transporter periplasmic glycerol-3-phosphate-binding proteinALQ61_04303Not AvailableNegative4552437 - 455375347467.1
rok proteinALQ61_04304Not AvailablePositive4553920 - 455504441395.7
hypothetical proteinALQ61_04305Not AvailableNegative4555288 - 455588722166.4
fmn-dependent proteinh-azoreductaseALQ61_100186Not AvailablePositive4556132 - 455676723165.0
glutathione s-transferase proteinALQ61_04306Not AvailablePositive4556954 - 455765526492.4
transcriptional regulatory proteinALQ61_05692Not AvailablePositive4557680 - 455843227524.8

Displaying genes 4071 – 4080 of 5027 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.