Pseudomonas coronafaciens pv. zizaniae strain ICMP 8941

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas coronafaciens pv. zizaniae strain ICMP 8941 is characterized by having a single replicon, indicating a streamlined genomic structure. The strain is catalogued under the accession number RBOZ00000000.1, which serves as a reference for its genomic data. As a member of the Pseudomonas genus, this strain is affiliated with various ecological roles, particularly in agricultural settings. Pseudomonas species are well-known for their versatility and adaptability, often participating in nutrient cycling and plant interactions. The specific pathovar designation, "pv. zizaniae," suggests a specialization in affecting certain plant hosts, likely within the Zizania genus, which includes wild rice species. This specialization may reflect an evolutionary adaptation to specific plant environments, leading to unique interactions and responses in the host. Understanding the traits of Pseudomonas coronafaciens pv. zizaniae strain ICMP 8941 contributes to knowledge about plant-associated bacteria and their roles in agriculture. Further exploration of its biological characteristics and ecological functions could provide insights into its potential applications in plant disease management or soil health enhancement.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas coronafaciens
Strainpv. zizaniae strain ICMP 8941

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas coronafaciens pv. zizaniae strain ICMP 8941
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas coronafaciens pv. zizaniae strain ICMP 8941

Gene Summary

Adenine Count

1200568 bp

Thymine Count

1187916 bp

Guanine Count

1633172 bp

Cytosine Count

1641582 bp

Genome Length

5673958 bp

Protein-coding Genes

4904 genes

Non-Coding Genes

123 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
abc transporter periplasmic substrate-binding proteinALQ61_04562Not AvailablePositive3999647 - 400087044969.7
aliphatic sulfonates import atp-binding protein ssubALQ61_00553Not AvailablePositive4001713 - 400242626134.9
putrescine-binding periplasmic proteinALQ61_00554Not AvailableNegative4002454 - 400353339394.2
hypothetical proteinALQ61_00555Not AvailablePositive4003910 - 40041769631.49
uvrd/rep helicase proteinALQ61_04564Not AvailableNegative4004215 - 400673794369.3
2-dehydro-3-deoxygluconokinaseALQ61_00557Not AvailableNegative4006844 - 400776733508.1
hypothetical proteinALQ61_00558Not AvailableNegative4007794 - 400899942997.8
iclr family transcriptional regulatorALQ61_00559Not AvailableNegative4009016 - 400978028712.4
endoribonuclease l-psp proteinALQ61_00560Not AvailableNegative4009858 - 401024414130.8
phosphate abc transporter atp-binding proteinALQ61_00561Not AvailableNegative4010283 - 401107429298.9

Displaying genes 3611 – 3620 of 5027 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.