Pseudomonas coronafaciens pv. zizaniae strain ICMP 8941

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas coronafaciens pv. zizaniae strain ICMP 8941 is characterized by having a single replicon, indicating a streamlined genomic structure. The strain is catalogued under the accession number RBOZ00000000.1, which serves as a reference for its genomic data. As a member of the Pseudomonas genus, this strain is affiliated with various ecological roles, particularly in agricultural settings. Pseudomonas species are well-known for their versatility and adaptability, often participating in nutrient cycling and plant interactions. The specific pathovar designation, "pv. zizaniae," suggests a specialization in affecting certain plant hosts, likely within the Zizania genus, which includes wild rice species. This specialization may reflect an evolutionary adaptation to specific plant environments, leading to unique interactions and responses in the host. Understanding the traits of Pseudomonas coronafaciens pv. zizaniae strain ICMP 8941 contributes to knowledge about plant-associated bacteria and their roles in agriculture. Further exploration of its biological characteristics and ecological functions could provide insights into its potential applications in plant disease management or soil health enhancement.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas coronafaciens
Strainpv. zizaniae strain ICMP 8941

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas coronafaciens pv. zizaniae strain ICMP 8941
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas coronafaciens pv. zizaniae strain ICMP 8941

Gene Summary

Adenine Count

1200568 bp

Thymine Count

1187916 bp

Guanine Count

1633172 bp

Cytosine Count

1641582 bp

Genome Length

5673958 bp

Protein-coding Genes

4904 genes

Non-Coding Genes

123 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ornithine aminotransferaseALQ61_00533Not AvailableNegative3973679 - 397493844029.8
hypothetical proteinALQ61_00534Not AvailableNegative3975489 - 397655939795.4
pyridoxal 5-phosphate -dependent ornithine decarboxylaseALQ61_00535Not AvailablePositive3977073 - 397823642938.1
dmt superfamily multiple drug efflux pumpALQ61_00536Not AvailablePositive3978260 - 397859511877.0
3',5'-cyclic adenosine monophosphate phosphodiesterase cpdaALQ61_100110Not AvailableNegative3978640 - 397943729650.5
ggdef domain-containing proteinALQ61_04554Not AvailableNegative3979583 - 398066540545.8
dienelactone hydrolase proteinALQ61_00538Not AvailablePositive3980993 - 398188032261.1
fad linked oxidaseALQ61_04555Not AvailableNegative3981997 - 3985122114926.0
lysr family transcriptional regulatorALQ61_04558Not AvailablePositive3985198 - 398613934456.4
polysaccharide deacetylase proteinALQ61_04559Not AvailableNegative3986147 - 398704633204.5

Displaying genes 3591 – 3600 of 5027 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.