Pseudomonas coronafaciens pv. zizaniae strain ICMP 8941

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas coronafaciens pv. zizaniae strain ICMP 8941 is characterized by having a single replicon, indicating a streamlined genomic structure. The strain is catalogued under the accession number RBOZ00000000.1, which serves as a reference for its genomic data. As a member of the Pseudomonas genus, this strain is affiliated with various ecological roles, particularly in agricultural settings. Pseudomonas species are well-known for their versatility and adaptability, often participating in nutrient cycling and plant interactions. The specific pathovar designation, "pv. zizaniae," suggests a specialization in affecting certain plant hosts, likely within the Zizania genus, which includes wild rice species. This specialization may reflect an evolutionary adaptation to specific plant environments, leading to unique interactions and responses in the host. Understanding the traits of Pseudomonas coronafaciens pv. zizaniae strain ICMP 8941 contributes to knowledge about plant-associated bacteria and their roles in agriculture. Further exploration of its biological characteristics and ecological functions could provide insights into its potential applications in plant disease management or soil health enhancement.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas coronafaciens
Strainpv. zizaniae strain ICMP 8941

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas coronafaciens pv. zizaniae strain ICMP 8941
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas coronafaciens pv. zizaniae strain ICMP 8941

Gene Summary

Adenine Count

1200568 bp

Thymine Count

1187916 bp

Guanine Count

1633172 bp

Cytosine Count

1641582 bp

Genome Length

5673958 bp

Protein-coding Genes

4904 genes

Non-Coding Genes

123 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
aldehyde dehydrogenase proteinALQ61_00056Not AvailableNegative1253515 - 125490650028.6
putative regulatory proteinALQ61_100017Not AvailablePositive1255004 - 125589732965.7
tartrate dehydrogenaseALQ61_00057Not AvailableNegative1255894 - 125698840241.9
lysr family transcriptional regulatorALQ61_00058Not AvailablePositive1257107 - 125801833887.7
putative proteinh-flavin oxidoreductaseALQ61_00059Not AvailableNegative1258086 - 125857117378.2
glutathione-independent formaldehyde dehydrogenaseALQ61_00060Not AvailablePositive1259104 - 126024340593.2
short chain dehydrogenase/reductase family oxidoreductaseALQ61_00061Not AvailablePositive1260327 - 126118730784.7
succinate-semialdehyde dehydrogenase proteinALQ61_00062Not AvailablePositive1261376 - 126280650706.0
d-alanyl-d-alanine endopeptidaseALQ61_00063Not AvailableNegative1262886 - 126382734253.9
hypothetical proteinALQ61_100270Not AvailablePositive1263970 - 126465025571.2

Displaying genes 1181 – 1190 of 5027 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.