Pseudomonas syringae pv. atrofaciens strain ICMP 5011

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas syringae pv. atrofaciens strain ICMP 5011 is a Gram-negative, rod-shaped bacterium characterized by its heterotrophic metabolism. This strain is an aerobic organism, requiring oxygen for growth, and exhibits mobility due to the presence of flagella. It typically exists as single cells rather than in clusters. The habitat of Pseudomonas syringae pv. atrofaciens strain ICMP 5011 is diverse, indicating its adaptability to various environmental conditions. As a mesophilic organism, it thrives within a moderate temperature range, which is common for many bacteria that inhabit temperate environments. This strain possesses a single replicon and is surrounded by two membranes, consistent with the structure of Gram-negative bacteria. Its free-living nature suggests that it plays an ecological role independent of other organisms, potentially influencing microbial communities and nutrient cycling in its habitat. Understanding the traits of Pseudomonas syringae pv. atrofaciens strain ICMP 5011 highlights its ecological versatility and the potential for interactions with plant hosts, as Pseudomonas syringae species are often associated with plant diseases. This information can be useful for agricultural practices, particularly in managing plant health and understanding microbial dynamics in various ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas syringae
Strainpv. atrofaciens strain ICMP 5011

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pseudomonas syringae pv. atrofaciens strain ICMP 5011
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceHeterotroph
PathogenicityNot Available

Genome Summary

Pseudomonas syringae pv. atrofaciens strain ICMP 5011

Gene Summary

Adenine Count

1200076 bp

Thymine Count

1207138 bp

Guanine Count

1750587 bp

Cytosine Count

1735084 bp

Genome Length

5909507 bp

Protein-coding Genes

5003 genes

Non-Coding Genes

113 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nucleoside abc transporter atp-binding proteinALQ76_04443Not AvailablePositive527804 - 52945659337.9
abc transporter permeaseALQ76_00932Not AvailablePositive529468 - 53056839386.6
nucleoside abc transporter membrane proteinALQ76_00933Not AvailablePositive530568 - 53149432523.2
putative short-chain dehydrogenaseALQ76_100495Not AvailablePositive531603 - 53242729319.1
hydroxydechloroatrazine ethylaminohydrolaseALQ76_00934Not AvailablePositive532551 - 53390648869.9
sodium/calcium exchanger membrane regionALQ76_04446Not AvailableNegative534011 - 53533647791.5
iron-dicitrate transporter substrate-binding subunitALQ76_00936Not AvailablePositive535364 - 53628433010.9
iron-dicitrate transporter permease subunitALQ76_00937Not AvailablePositive536285 - 53727433712.4
iron dicitrate transport system, permease protein fecdALQ76_00938Not AvailablePositive537271 - 53823933552.3
iron dicitrate transport system, atp-binding protein feceALQ76_00939Not AvailablePositive538244 - 53903528390.4

Displaying genes 441 – 450 of 5116 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.