Pseudomonas syringae pv. atrofaciens strain ICMP 5011

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas syringae pv. atrofaciens strain ICMP 5011 is a Gram-negative, rod-shaped bacterium characterized by its heterotrophic metabolism. This strain is an aerobic organism, requiring oxygen for growth, and exhibits mobility due to the presence of flagella. It typically exists as single cells rather than in clusters. The habitat of Pseudomonas syringae pv. atrofaciens strain ICMP 5011 is diverse, indicating its adaptability to various environmental conditions. As a mesophilic organism, it thrives within a moderate temperature range, which is common for many bacteria that inhabit temperate environments. This strain possesses a single replicon and is surrounded by two membranes, consistent with the structure of Gram-negative bacteria. Its free-living nature suggests that it plays an ecological role independent of other organisms, potentially influencing microbial communities and nutrient cycling in its habitat. Understanding the traits of Pseudomonas syringae pv. atrofaciens strain ICMP 5011 highlights its ecological versatility and the potential for interactions with plant hosts, as Pseudomonas syringae species are often associated with plant diseases. This information can be useful for agricultural practices, particularly in managing plant health and understanding microbial dynamics in various ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas syringae
Strainpv. atrofaciens strain ICMP 5011

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pseudomonas syringae pv. atrofaciens strain ICMP 5011
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceHeterotroph
PathogenicityNot Available

Genome Summary

Pseudomonas syringae pv. atrofaciens strain ICMP 5011

Gene Summary

Adenine Count

1200076 bp

Thymine Count

1207138 bp

Guanine Count

1750587 bp

Cytosine Count

1735084 bp

Genome Length

5909507 bp

Protein-coding Genes

5003 genes

Non-Coding Genes

113 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
pyridoxal-phosphate dependent enzyme family/ornithine cyclodeaminaseALQ76_04426Not AvailableNegative119858 - 12205678817.1
putative l-lysine 6-monooxygenaseALQ76_04427Not AvailableNegative122047 - 12381364890.8
putative periplasmic substrate-binding protein of an abc-type transport systemALQ76_00824Not AvailableNegative123411 - 12439135500.1
fad dependent oxidoreductaseALQ76_00825Not AvailableNegative124388 - 12554240823.1
hypothetical proteinALQ76_00826Not AvailableNegative127049 - 12744114869.5
site-specific recombinase, phage integrase familyALQ76_04428Not AvailableNegative127776 - 12884340549.8
putative toxin-antitoxin system antitoxin componentALQ76_00828Not AvailablePositive128965 - 12942917088.4
zinc-containing alcohol dehydrogenase super proteinALQ76_00829Not AvailableNegative129435 - 13043034852.0
regulatory protein, tetrALQ76_00830Not AvailableNegative130468 - 13112724511.5
2-nitropropane dioxygenaseALQ76_00831Not AvailablePositive131263 - 13234238066.6

Displaying genes 181 – 190 of 5116 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.