Pseudomonas corrugata strain NCPPB2445

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas corrugata strain NCPPB2445 is characterized by having a single replicon and is known to infect Solanum lycopersicum, commonly known as tomato plants. This strain is associated with the health issue known as tomato pit necrosis, which can have detrimental effects on tomato crop yield and quality. The strain's designation in the public database is RBOJ00000000.1, indicating its genomic sequence is available for further study. Understanding the interactions between Pseudomonas corrugata and its host, Solanum lycopersicum, is crucial for developing strategies to mitigate the associated health effects, particularly the tomato pit necrosis. The biological or ecological insight from this information suggests that Pseudomonas corrugata strain NCPPB2445 plays a significant role in the health of tomato plants, highlighting the importance of monitoring and managing this pathogen in agricultural practices to ensure the sustainability and productivity of tomato crops.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas corrugata
Strainstrain NCPPB2445

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas corrugata strain NCPPB2445
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Solanum lycopersicum
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas corrugata strain NCPPB2445 PcoNCPPB2445_Contig_10,

Gene Summary

Adenine Count

1186629 bp

Thymine Count

1194969 bp

Guanine Count

1839782 bp

Cytosine Count

1826245 bp

Genome Length

6057156 bp

Protein-coding Genes

4807 genes

Non-Coding Genes

82 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Tail proteinALQ77_02146Not AvailableNegative586430 - 58744636875.3
Phage tail xALQ77_02147Not AvailableNegative587456 - 5876687641.19
Putative tail proteinALQ77_02148Not AvailableNegative587661 - 58804413993.8
Putative tail tape measureALQ77_02149Not AvailableNegative588044 - 59012269930.3
hypothetical proteinALQ77_02150Not AvailableNegative590129 - 5902544699.8
Hypothetical proteinALQ77_02151Not AvailableNegative590251 - 59083521555.8
Putative tail tube proteinALQ77_02152Not AvailableNegative590977 - 59148318419.3
Major tail sheath proteinALQ77_02153Not AvailableNegative591483 - 59264941902.0
hypothetical proteinALQ77_02154Not AvailableNegative592652 - 5928798028.62
Tail fiber proteinALQ77_02155Not AvailableNegative592967 - 5932249745.6

Displaying genes 11 – 20 of 4889 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Tomato pit necrosisCausesPMC10955138

Displaying health effects 1 – 1 of 1 in total