Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas amygdali |
| Strain | pv. lachrymans strain YM8003 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | aerosols; greenhouses |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Oryza sativa, Cucumis sativus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | cucumber; Plant |
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
5428 genes
Non-Coding Genes
740 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptide abc transporter, periplasmic peptide-binding protein | ALQ79_00303 | Not Available | Positive | 3500419 - 3502026 | 59615.8 |
| dipeptide abc transporter, periplasmic dipeptide-binding protein | ALQ79_04554 | Not Available | Positive | 3502112 - 3503865 | 66146.0 |
| hypothetical protein | ALQ79_03157 | Not Available | Negative | 3504029 - 3504181 | 5315.22 |
| conjugal transfer protein trbc | ALQ79_05243 | Not Available | Negative | 3504279 - 3504468 | 6787.9 |
| c-5 cytosine-specific dna methylase protein | ALQ79_02336 | Not Available | Positive | 3504791 - 3505075 | 10402.8 |
| hypothetical protein | ALQ79_02337 | Not Available | Positive | 3505072 - 3505875 | 29852.8 |
| site-specific recombinase, phage integrase protein | ALQ79_00847 | Not Available | Negative | 3507472 - 3507897 | 16053.3 |
| Trna-met | Not Available | Not Available | Positive | 3508011 - 3508087 | Not Available |
| sensory box/ggdef domain/eal domain-containing protein | ALQ79_00848 | Not Available | Negative | 3508103 - 3510592 | 91744.5 |
| rna polymerase sigma factor rpod | ALQ79_04688 | Not Available | Negative | 3510858 - 3512708 | 69506.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Angular leaf spot | Causes | PMC7586749 |
| Angular leaf spot | Causes | PMC6960962 |
| Bacterial angular leaf spot | Causes | PMC9343901 |
| Angular leaf spot (als) disease | Causes | PMC9936812 |
| Als disease | Causes | PMC9936812 |
| Angular leaf spot | Causes | PMC9936812 |
| Als | Causes | PMC9936812 |
| Cucumber als disease | Causes | PMC9936812 |







