Pseudomonas amygdali pv. lachrymans strain YM8003

RodMotile

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas amygdali pv. lachrymans strain YM8003 is a Gram-negative bacterium characterized by its rod shape and motility. This strain is primarily found in aerosols and greenhouses, suggesting an environmental preference for controlled agricultural settings. It possesses a single replicon, which is characteristic of many bacterial species. This pathogen is known to infect a variety of hosts, including Solanum lycopersicum (tomato), Oryza sativa (rice), Cucumis sativus (cucumber), Olea (olive), Cucumis melo (melon), Citrullus lanatus (watermelon), Avena sativa (oat), and Cucurbita maxima (pumpkin). The wide host range indicates its potential impact on diverse agricultural crops. Pseudomonas amygdali pv. lachrymans strain YM8003 is associated with angular leaf spot (ALS) diseases, specifically affecting cucumbers and other host plants. The disease manifests as angular leaf spots on the foliage, which can lead to significant agricultural losses. The identification of this strain and its pathogenic effects highlights the importance of monitoring and managing bacterial diseases in crop production. The ecological insight from this strain's behavior and pathogenicity underscores the necessity for integrated pest management strategies in greenhouse environments. Given its ability to thrive in aerosols, there is a potential for rapid spread within cultivated areas, emphasizing the need for vigilance in disease control practices to protect susceptible crops.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas amygdali
Strainpv. lachrymans strain YM8003

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas amygdali pv. lachrymans strain YM8003
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitataerosols; greenhouses
Biotic relationshipNot Available
Host(s)Solanum lycopersicum, Oryza sativa, Cucumis sativus
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
Pathogenicitycucumber; Plant

Genome Summary

Pseudomonas amygdali pv. lachrymans strain YM8003

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

5428 genes

Non-Coding Genes

740 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
siroheme synthaseALQ79_04948Not AvailableNegative2149869 - 215126349996.7
serine--trna ligaseALQ79_01931Not AvailableNegative2151264 - 215254447246.4
putative fluoride ion transporter crcbALQ79_01932Not AvailableNegative2152561 - 215293513049.3
recombination factor protein raraALQ79_01933Not AvailableNegative2152935 - 215425748893.3
outer-membrane lipoprotein carrier proteinALQ79_01934Not AvailableNegative2154276 - 215489922882.6
cell division protein ftskALQ79_01935Not AvailableNegative2154976 - 215738187587.7
hypothetical proteinALQ79_01936Not AvailablePositive2157618 - 21578097288.82
leucyl/phenylalanyl-trna--protein transferaseALQ79_01937Not AvailablePositive2157850 - 215853926052.8
putative arginyl-trna--protein transferaseALQ79_04950Not AvailablePositive2158588 - 215929527809.2
translation initiation factor if-1ALQ79_01939Not AvailablePositive2159397 - 21596158303.06

Displaying genes 2131 – 2140 of 6168 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Angular leaf spotCausesPMC7586749
Angular leaf spotCausesPMC6960962
Bacterial angular leaf spotCausesPMC9343901
Angular leaf spot (als) diseaseCausesPMC9936812
Als diseaseCausesPMC9936812
Angular leaf spotCausesPMC9936812
AlsCausesPMC9936812
Cucumber als diseaseCausesPMC9936812

Displaying health effects 1 – 8 of 8 in total