Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas amygdali |
| Strain | pv. lachrymans strain YM8003 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | aerosols; greenhouses |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Oryza sativa, Cucumis sativus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | cucumber; Plant |
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
5428 genes
Non-Coding Genes
740 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| two-component sensor histidine kinase | ALQ79_00772 | Not Available | Positive | 1253197 - 1255821 | 94171.3 |
| hypothetical protein | ALQ79_101444 | Not Available | Positive | 1255840 - 1255968 | 4190.24 |
| hypothetical protein | ALQ79_00773 | Not Available | Negative | 1256008 - 1256952 | 35172.7 |
| hypothetical protein | ALQ79_101966 | Not Available | Negative | 1257019 - 1257324 | 10964.1 |
| type iii effector hopaa1-1 | ALQ79_00774 | Not Available | Positive | 1257323 - 1258783 | 50727.9 |
| type iii helper protein hrpw1 | ALQ79_00775 | Not Available | Negative | 1258870 - 1259469 | 21514.9 |
| type iii helper protein hrpw1 | ALQ79_00776 | Not Available | Negative | 1259765 - 1260151 | 13970.3 |
| type iii chaperone protein shcm | ALQ79_00777 | Not Available | Positive | 1260455 - 1260949 | 18145.5 |
| effector protein hopm1 | ALQ79_00778 | Not Available | Positive | 1260946 - 1263180 | 78353.2 |
| type iii chaperone protein avrf | ALQ79_00779 | Not Available | Positive | 1263258 - 1263653 | 14712.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Angular leaf spot | Causes | PMC7586749 |
| Angular leaf spot | Causes | PMC6960962 |
| Bacterial angular leaf spot | Causes | PMC9343901 |
| Angular leaf spot (als) disease | Causes | PMC9936812 |
| Als disease | Causes | PMC9936812 |
| Angular leaf spot | Causes | PMC9936812 |
| Als | Causes | PMC9936812 |
| Cucumber als disease | Causes | PMC9936812 |







