Pseudomonas syringae pv. ribicola strain ICMP 3883

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas syringae pv. ribicola strain ICMP 3883 is a notable bacterial pathogen primarily associated with ribes plants. This strain is characterized by having a single replicon, which is significant for its genetic stability and replication processes. The strain has been assigned the accession number RBNR00000000.1, indicating it is cataloged in genomic databases for reference and further studies. As a member of the Pseudomonas syringae species, this pathogen plays a critical role in plant pathology, particularly affecting agricultural crops. Its interactions with host plants can lead to significant economic impacts due to crop loss and the necessity for management strategies to mitigate disease spread. In an ecological context, Pseudomonas syringae pv. ribicola strain ICMP 3883 contributes to the complex dynamics of plant-microbe interactions. Understanding its genetic and pathogenic traits can provide insights into how bacterial pathogens adapt to their hosts and the environmental factors influencing these relationships. This knowledge is essential for developing effective disease management practices in agriculture and enhancing crop resilience against bacterial infections.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas syringae group genomosp. 3
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas syringae pv. ribicola strain ICMP 3883
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas syringae pv. ribicola strain ICMP 3883

Gene Summary

Adenine Count

1263769 bp

Thymine Count

1275368 bp

Guanine Count

1800957 bp

Cytosine Count

1793119 bp

Genome Length

6156903 bp

Protein-coding Genes

5393 genes

Non-Coding Genes

136 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
oxidoreductase zinc-binding proteinALQ95_02478Not AvailablePositive2557002 - 255771525536.0
iclr family transcriptional regulatorALQ95_02479Not AvailableNegative2557727 - 255853629589.7
mfs transporter, phthalate permease familyALQ95_02480Not AvailableNegative2558618 - 255992847622.0
mandelate racemase/muconate lactonizing enzyme proteinALQ95_02481Not AvailableNegative2560223 - 256137142268.7
2-dehydro-3-deoxy-6-phosphogalactonate aldolaseALQ95_02482Not AvailableNegative2561432 - 256206721902.8
2-dehydro-3-deoxygalactonokinaseALQ95_05063Not AvailableNegative2562069 - 256307335699.8
hypothetical proteinALQ95_101539Not AvailablePositive2563062 - 25632296464.8
aspartate-semialdehyde dehydrogenaseALQ95_02483Not AvailableNegative2563240 - 256435240430.0
3-isopropylmalate dehydrogenaseALQ95_02484Not AvailableNegative2564423 - 256550538787.0
3-isopropylmalate dehydratase small subunitALQ95_02485Not AvailableNegative2565652 - 256629324069.4

Displaying genes 2341 – 2350 of 5529 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.