Pseudomonas syringae pv. ribicola strain ICMP 3883

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas syringae pv. ribicola strain ICMP 3883 is a notable bacterial pathogen primarily associated with ribes plants. This strain is characterized by having a single replicon, which is significant for its genetic stability and replication processes. The strain has been assigned the accession number RBNR00000000.1, indicating it is cataloged in genomic databases for reference and further studies. As a member of the Pseudomonas syringae species, this pathogen plays a critical role in plant pathology, particularly affecting agricultural crops. Its interactions with host plants can lead to significant economic impacts due to crop loss and the necessity for management strategies to mitigate disease spread. In an ecological context, Pseudomonas syringae pv. ribicola strain ICMP 3883 contributes to the complex dynamics of plant-microbe interactions. Understanding its genetic and pathogenic traits can provide insights into how bacterial pathogens adapt to their hosts and the environmental factors influencing these relationships. This knowledge is essential for developing effective disease management practices in agriculture and enhancing crop resilience against bacterial infections.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas syringae group genomosp. 3
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas syringae pv. ribicola strain ICMP 3883
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas syringae pv. ribicola strain ICMP 3883

Gene Summary

Adenine Count

1263769 bp

Thymine Count

1275368 bp

Guanine Count

1800957 bp

Cytosine Count

1793119 bp

Genome Length

6156903 bp

Protein-coding Genes

5393 genes

Non-Coding Genes

136 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type iii helper protein hrpk1ALQ95_05307Not AvailableNegative1945324 - 194789789651.9
rna polymerase sigma factorALQ95_03387Not AvailableNegative1947735 - 194828921149.4
type iii secretion protein hrpjALQ95_03388Not AvailablePositive1948533 - 194963940729.8
type iii secretion protein hrcvALQ95_03389Not AvailablePositive1949639 - 195172676318.7
yscd/hrpq family type iii secretion apparatus proteinALQ95_03390Not AvailablePositive1951760 - 195275235891.7
flagellum-specific atp synthase fliiALQ95_100342Not AvailablePositive1952749 - 195409848398.6
type iii secretion protein hrpoALQ95_03391Not AvailablePositive1954101 - 195454717480.6
type iii secretion protein hrppALQ95_03392Not AvailablePositive1954554 - 195512320189.1
type iii secretion protein hrcqaALQ95_03393Not AvailablePositive1955120 - 195583626069.2
type iii secretion protein hrcqbALQ95_03394Not AvailablePositive1955826 - 195622714716.5

Displaying genes 1821 – 1830 of 5529 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.