Pseudomonas syringae pv. ribicola strain ICMP 3883

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas syringae pv. ribicola strain ICMP 3883 is a notable bacterial pathogen primarily associated with ribes plants. This strain is characterized by having a single replicon, which is significant for its genetic stability and replication processes. The strain has been assigned the accession number RBNR00000000.1, indicating it is cataloged in genomic databases for reference and further studies. As a member of the Pseudomonas syringae species, this pathogen plays a critical role in plant pathology, particularly affecting agricultural crops. Its interactions with host plants can lead to significant economic impacts due to crop loss and the necessity for management strategies to mitigate disease spread. In an ecological context, Pseudomonas syringae pv. ribicola strain ICMP 3883 contributes to the complex dynamics of plant-microbe interactions. Understanding its genetic and pathogenic traits can provide insights into how bacterial pathogens adapt to their hosts and the environmental factors influencing these relationships. This knowledge is essential for developing effective disease management practices in agriculture and enhancing crop resilience against bacterial infections.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas syringae group genomosp. 3
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas syringae pv. ribicola strain ICMP 3883
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas syringae pv. ribicola strain ICMP 3883

Gene Summary

Adenine Count

1263769 bp

Thymine Count

1275368 bp

Guanine Count

1800957 bp

Cytosine Count

1793119 bp

Genome Length

6156903 bp

Protein-coding Genes

5393 genes

Non-Coding Genes

136 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
bifunctional protein foldALQ95_00544Not AvailablePositive1344423 - 134532531572.3
hypothetical proteinALQ95_100145Not AvailablePositive1345307 - 134654845154.4
sarcosine oxidase subunit alphaALQ95_00545Not AvailablePositive1346562 - 134686711680.6
sarcosine oxidase, alpha subunit proteinALQ95_100183Not AvailablePositive1346720 - 1349770111772.0
sarcosine oxidase, gamma subunitALQ95_00546Not AvailablePositive1349774 - 135034620739.7
methyl-accepting chemotaxis proteinALQ95_00547Not AvailablePositive1350560 - 135250069734.5
lysr family transcriptional regulatorALQ95_00548Not AvailableNegative1352976 - 135386031685.2
metallo-beta-lactamase super proteinALQ95_00549Not AvailablePositive1353968 - 135485831772.5
hypothetical proteinALQ95_00550Not AvailablePositive1354912 - 135531015050.4
gnat family acetyltransferaseALQ95_00551Not AvailablePositive1355371 - 135585617943.1

Displaying genes 1261 – 1270 of 5529 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.