Pseudomonas syringae pv. ribicola strain ICMP 3883

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas syringae pv. ribicola strain ICMP 3883 is a notable bacterial pathogen primarily associated with ribes plants. This strain is characterized by having a single replicon, which is significant for its genetic stability and replication processes. The strain has been assigned the accession number RBNR00000000.1, indicating it is cataloged in genomic databases for reference and further studies. As a member of the Pseudomonas syringae species, this pathogen plays a critical role in plant pathology, particularly affecting agricultural crops. Its interactions with host plants can lead to significant economic impacts due to crop loss and the necessity for management strategies to mitigate disease spread. In an ecological context, Pseudomonas syringae pv. ribicola strain ICMP 3883 contributes to the complex dynamics of plant-microbe interactions. Understanding its genetic and pathogenic traits can provide insights into how bacterial pathogens adapt to their hosts and the environmental factors influencing these relationships. This knowledge is essential for developing effective disease management practices in agriculture and enhancing crop resilience against bacterial infections.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas syringae group genomosp. 3
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas syringae pv. ribicola strain ICMP 3883
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas syringae pv. ribicola strain ICMP 3883

Gene Summary

Adenine Count

1263769 bp

Thymine Count

1275368 bp

Guanine Count

1800957 bp

Cytosine Count

1793119 bp

Genome Length

6156903 bp

Protein-coding Genes

5393 genes

Non-Coding Genes

136 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
conjugal transfer relaxosome component trajALQ95_101429Not AvailablePositive1239809 - 124020715067.5
p-type conjugative transfer protein trbjALQ95_00678Not AvailablePositive1240250 - 124100527226.0
p-type conjugative transfer protein trblALQ95_00679Not AvailablePositive1241208 - 124259347811.2
hypothetical proteinALQ95_00680Not AvailablePositive1242976 - 124403141489.4
hypothetical proteinALQ95_00681Not AvailablePositive1244354 - 124560147087.4
helix-turn-helix domain proteinALQ95_00682Not AvailableNegative1246618 - 124773041438.3
peptidase, m20/m25/m40 familyALQ95_01258Not AvailableNegative1248951 - 125010841341.7
aldehyde dehydrogenase proteinALQ95_01259Not AvailableNegative1250113 - 125163054055.3
3-hydroxyisobutyrate dehydrogenaseALQ95_01260Not AvailableNegative1251634 - 125255731598.0
lysr family transcriptional regulatorALQ95_01261Not AvailablePositive1252685 - 125359033279.5

Displaying genes 1161 – 1170 of 5529 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.