Pseudomonas syringae pv. atrofaciens strain DSM 5025

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas syringae pv. atrofaciens strain DSM 5025 is a Gram-negative, rod-shaped bacterium characterized by its aerobic metabolism and heterotrophic energy source. This strain is capable of mobility, facilitated by the presence of flagella, and typically exists as single cells rather than in clusters. It thrives within a mesophilic temperature range, indicating its preference for moderate temperatures that are commonly found in various environments. The bacterium is free-living, suggesting it does not require a host for survival and can adapt to multiple habitats. With a single replicon and a double membrane structure, Pseudomonas syringae pv. atrofaciens strain DSM 5025 exhibits typical features of the Pseudomonas genus, which is known for its metabolic versatility and ecological significance. The ability of this strain to exist in diverse environments while being a heterotroph indicates its ecological role in nutrient cycling. It likely participates in the decomposition of organic matter, contributing to soil health and plant interactions. Understanding the traits of Pseudomonas syringae pv. atrofaciens strain DSM 5025 can provide insights into its potential applications in agriculture and environmental management, particularly in the context of plant health and disease resistance.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas syringae
Strainpv. atrofaciens strain DSM 5025

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pseudomonas syringae pv. atrofaciens strain DSM 5025
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceHeterotroph
PathogenicityNot Available

Genome Summary

Pseudomonas syringae pv. atrofaciens strain DSM 5025

Gene Summary

Adenine Count

1188733 bp

Thymine Count

1197530 bp

Guanine Count

1739084 bp

Cytosine Count

1722984 bp

Genome Length

5860345 bp

Protein-coding Genes

4894 genes

Non-Coding Genes

191 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
vanillate monooxygenase, oxygenase subunitALQ96_00594Not AvailablePositive5316831 - 531789539601.2
vanillate monooxygenase, oxidoreductase subunitALQ96_00595Not AvailablePositive5317969 - 531891934635.2
transcriptional regulator vanrALQ96_00596Not AvailableNegative5318920 - 531963326192.6
diguanylate cye/phosphodiesterase domain signal transduction proteinALQ96_00597Not AvailableNegative5319706 - 532167672028.6
inosine-uridine preferring nucleoside hydrolaseALQ96_101996Not AvailablePositive5321867 - 53221369634.71
hypothetical proteinALQ96_04516Not AvailableNegative5322037 - 532272025031.7
lysr family transcriptional regulatorALQ96_04517Not AvailableNegative5322859 - 532396840786.3
major facilitator superfamilyALQ96_00600Not AvailablePositive5323865 - 532524149486.7
putative d-galactonate dehydrataseALQ96_00601Not AvailablePositive5325260 - 532653446575.6
antibiotic biosynthesis monooxygenase proteinALQ96_00602Not AvailableNegative5326735 - 532704311097.2

Displaying genes 4641 – 4650 of 5087 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.