Pseudomonas syringae pv. atrofaciens strain DSM 5025

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas syringae pv. atrofaciens strain DSM 5025 is a Gram-negative, rod-shaped bacterium characterized by its aerobic metabolism and heterotrophic energy source. This strain is capable of mobility, facilitated by the presence of flagella, and typically exists as single cells rather than in clusters. It thrives within a mesophilic temperature range, indicating its preference for moderate temperatures that are commonly found in various environments. The bacterium is free-living, suggesting it does not require a host for survival and can adapt to multiple habitats. With a single replicon and a double membrane structure, Pseudomonas syringae pv. atrofaciens strain DSM 5025 exhibits typical features of the Pseudomonas genus, which is known for its metabolic versatility and ecological significance. The ability of this strain to exist in diverse environments while being a heterotroph indicates its ecological role in nutrient cycling. It likely participates in the decomposition of organic matter, contributing to soil health and plant interactions. Understanding the traits of Pseudomonas syringae pv. atrofaciens strain DSM 5025 can provide insights into its potential applications in agriculture and environmental management, particularly in the context of plant health and disease resistance.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas syringae
Strainpv. atrofaciens strain DSM 5025

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pseudomonas syringae pv. atrofaciens strain DSM 5025
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceHeterotroph
PathogenicityNot Available

Genome Summary

Pseudomonas syringae pv. atrofaciens strain DSM 5025

Gene Summary

Adenine Count

1188733 bp

Thymine Count

1197530 bp

Guanine Count

1739084 bp

Cytosine Count

1722984 bp

Genome Length

5860345 bp

Protein-coding Genes

4894 genes

Non-Coding Genes

191 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
zinc-dependent metalloproteaseALQ96_01232Not AvailableNegative3910832 - 391168031259.8
n-succinyl-l,l-diaminopimelate transaminaseALQ96_01233Not AvailableNegative3911812 - 391300543698.3
bifunctional uridylyltransferase/uridylyl-removing enzymeALQ96_01234Not AvailableNegative3913057 - 3915753102863.0
methionine aminopeptidaseALQ96_01235Not AvailableNegative3915819 - 391660128792.7
hypothetical proteinALQ96_102392Not AvailablePositive3916617 - 39167394649.78
30s ribosomal protein s2ALQ96_01236Not AvailablePositive3916916 - 391765927207.0
elongation factor tALQ96_01237Not AvailablePositive3917850 - 391871330537.9
uridylate kinaseALQ96_01238Not AvailablePositive3918919 - 391965926442.3
ribosome-recycling factorALQ96_01239Not AvailablePositive3919659 - 392021620468.6
ditrans,polycis-undecaprenyl-diphosphate synthaseALQ96_01240Not AvailablePositive3920233 - 392098828192.8

Displaying genes 3401 – 3410 of 5087 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.