Pseudomonas syringae pv. atrofaciens strain DSM 5025

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas syringae pv. atrofaciens strain DSM 5025 is a Gram-negative, rod-shaped bacterium characterized by its aerobic metabolism and heterotrophic energy source. This strain is capable of mobility, facilitated by the presence of flagella, and typically exists as single cells rather than in clusters. It thrives within a mesophilic temperature range, indicating its preference for moderate temperatures that are commonly found in various environments. The bacterium is free-living, suggesting it does not require a host for survival and can adapt to multiple habitats. With a single replicon and a double membrane structure, Pseudomonas syringae pv. atrofaciens strain DSM 5025 exhibits typical features of the Pseudomonas genus, which is known for its metabolic versatility and ecological significance. The ability of this strain to exist in diverse environments while being a heterotroph indicates its ecological role in nutrient cycling. It likely participates in the decomposition of organic matter, contributing to soil health and plant interactions. Understanding the traits of Pseudomonas syringae pv. atrofaciens strain DSM 5025 can provide insights into its potential applications in agriculture and environmental management, particularly in the context of plant health and disease resistance.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas syringae
Strainpv. atrofaciens strain DSM 5025

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pseudomonas syringae pv. atrofaciens strain DSM 5025
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceHeterotroph
PathogenicityNot Available

Genome Summary

Pseudomonas syringae pv. atrofaciens strain DSM 5025

Gene Summary

Adenine Count

1188733 bp

Thymine Count

1197530 bp

Guanine Count

1739084 bp

Cytosine Count

1722984 bp

Genome Length

5860345 bp

Protein-coding Genes

4894 genes

Non-Coding Genes

191 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
pyoverdine biosynthesis-related protein pvdpALQ96_04139Not AvailablePositive3439202 - 344083662399.7
pyoverdine rnd-type efflux system, outer membrane protein ompqALQ96_05404Not AvailableNegative3441098 - 344253452429.9
macrolide export atp-binding/permease protein macbALQ96_04141Not AvailableNegative3442494 - 344446469650.1
pyoverdine rnd-type efflux system, mfp subunit pvdrALQ96_04142Not AvailableNegative3444465 - 344563741941.1
3-oxo-c12-homoserine lactone acylase pvdqALQ96_04143Not AvailablePositive3445830 - 344816384707.0
hypothetical proteinALQ96_04144Not AvailableNegative3448216 - 344852710958.0
aspartate/tyrosine/aromatic amino acid aminotransferaseALQ96_04145Not AvailableNegative3448750 - 344994643321.9
uvrabc system protein bALQ96_04146Not AvailablePositive3450348 - 345236376361.3
putative exonuclease, dna ligase-associatedALQ96_03700Not AvailablePositive3452703 - 345374938237.0
atp-dependent dna ligaseALQ96_03701Not AvailablePositive3453746 - 345544963627.1

Displaying genes 3011 – 3020 of 5087 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.