Bacterium D16-50 strain D16-50

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Phylum

Class

Order

Family

Genus

Description

The Bacterium D16-50 strain D16-50 is characterized by possessing a single replicon, indicating a streamlined genomic structure that may contribute to its adaptability in various environments. This trait is significant as the number of replicons can influence the regulation of replication and gene expression within a bacterium. The strain is cataloged under the accession number RAZA00000000.1, which allows for its identification and retrieval in genomic databases. This accession serves as a reference point for researchers studying D16-50, facilitating comparisons with other bacterial strains and providing insights into its genetic characteristics. The presence of a single replicon may suggest a potential for rapid growth and efficiency in resource utilization, which can be advantageous in competitive ecological niches. Strains like D16-50 with simplified genomic architectures often exhibit specific adaptations that enable them to thrive under particular environmental conditions. In summary, the Bacterium D16-50 strain D16-50, with its single replicon and defined genetic accessions, presents an intriguing subject for further research into its ecological roles and potential applications in microbiology. Understanding its biology and ecology could yield insights into how simplified genomic structures can influence bacterial survival and adaptability in diverse habitats.

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Bacterium D16-50 strain D16-50 Scaffold167_1, whole genome shotgun

Gene Summary

Adenine Count

1217114 bp

Thymine Count

1223168 bp

Guanine Count

1272317 bp

Cytosine Count

1250340 bp

Genome Length

4975222 bp

Protein-coding Genes

4166 genes

Non-Coding Genes

257 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
flavodoxin-dependent (e)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthaseD7X48_16005Not AvailableNegative3615812 - 361686437546.9
dna-protecting protein dpraD7X48_16010Not AvailableNegative3617072 - 361833446058.3
atp-binding proteinD7X48_16015Not AvailableNegative3618385 - 361994156642.8
hypothetical proteinD7X48_16020Not AvailableNegative3620618 - 362091711520.3
xre family transcriptional regulatorD7X48_16025Not AvailablePositive3621241 - 362219136169.4
abc transporter atp-binding proteinD7X48_16030Not AvailablePositive3622376 - 362402860916.8
sigma-70 family rna polymerase sigma factorD7X48_16040Not AvailableNegative3625589 - 362622424404.4
oxygen-independent coproporphyrinogen iii oxidaseD7X48_16045Not AvailableNegative3626347 - 362750143924.4
elongation factor 4D7X48_16050Not AvailableNegative3627572 - 362942268730.9
hypothetical proteinD7X48_16055Not AvailablePositive3629823 - 363170971642.1

Displaying genes 3211 – 3220 of 4424 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.