Chakrabartia godavariana strain KCTC 52944

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Chakrabartia

Description

Chakrabartia godavariana strain KCTC 52944 is characterized by having a single replicon. This trait is significant as it suggests a simpler genomic architecture compared to organisms with multiple replicons, potentially affecting its replication and gene expression dynamics. The strain is cataloged under the accession number RAGX00000000.1, which provides a reference for researchers looking to access its genomic data and further understand its biological functions. The single-replicon feature may indicate a streamlined genomic organization, which can be an advantage in specific ecological niches where metabolic efficiency is crucial. Such organisms might exhibit rapid growth rates and adaptability in environments with limited resources, as they may devote less energy to managing multiple replicons. In a broader ecological context, the characteristics of Chakrabartia godavariana strain KCTC 52944 may allow it to thrive in particular habitats, potentially contributing to nutrient cycling and other ecological processes. Understanding the genomic and biological traits of this strain can inform research on microbial ecology and the roles that single-replicon organisms play in their ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusChakrabartia
SpeciesChakrabartia godavariana
Strainstrain KCTC 52944

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Chakrabartia godavariana strain KCTC 52944 M10002_Contig98, whole

Gene Summary

Adenine Count

660557 bp

Thymine Count

665609 bp

Guanine Count

1183425 bp

Cytosine Count

1173690 bp

Genome Length

3683281 bp

Protein-coding Genes

3432 genes

Non-Coding Genes

109 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dihydrolipoyl dehydrogenaseD5I55_17305Not AvailableNegative3548357 - 354975148000.2
giy-yig nuclease family proteinD5I55_17310Not AvailableNegative3549798 - 355006410534.7
2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferaseD5I55_17315Not AvailableNegative3550148 - 355137442482.2
2-oxoglutarate dehydrogenase e1 componentD5I55_17320Not AvailableNegative3551377 - 3554184103311.0
succinate--coa ligase subunit alphaD5I55_17325Not AvailableNegative3554233 - 355511730192.5
hypothetical proteinD5I55_17330Not AvailableNegative3555132 - 355546711455.3
malate dehydrogenaseD5I55_17335Not AvailableNegative3555467 - 355642933295.6
dsba family oxidoreductaseD5I55_17340Not AvailablePositive3556642 - 355730124210.6
m20/m25/m40 family metallo-hydrolaseD5I55_17345Not AvailableNegative3557426 - 355880250440.2
afg1 family atpaseD5I55_17350Not AvailableNegative3558846 - 355995841122.4

Displaying genes 3411 – 3420 of 3541 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.