Chakrabartia godavariana strain KCTC 52944

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Chakrabartia

Description

Chakrabartia godavariana strain KCTC 52944 is characterized by having a single replicon. This trait is significant as it suggests a simpler genomic architecture compared to organisms with multiple replicons, potentially affecting its replication and gene expression dynamics. The strain is cataloged under the accession number RAGX00000000.1, which provides a reference for researchers looking to access its genomic data and further understand its biological functions. The single-replicon feature may indicate a streamlined genomic organization, which can be an advantage in specific ecological niches where metabolic efficiency is crucial. Such organisms might exhibit rapid growth rates and adaptability in environments with limited resources, as they may devote less energy to managing multiple replicons. In a broader ecological context, the characteristics of Chakrabartia godavariana strain KCTC 52944 may allow it to thrive in particular habitats, potentially contributing to nutrient cycling and other ecological processes. Understanding the genomic and biological traits of this strain can inform research on microbial ecology and the roles that single-replicon organisms play in their ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusChakrabartia
SpeciesChakrabartia godavariana
Strainstrain KCTC 52944

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Chakrabartia godavariana strain KCTC 52944 M10002_Contig98, whole

Gene Summary

Adenine Count

660557 bp

Thymine Count

665609 bp

Guanine Count

1183425 bp

Cytosine Count

1173690 bp

Genome Length

3683281 bp

Protein-coding Genes

3432 genes

Non-Coding Genes

109 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
acetyl-coa carboxylase carboxyltransferase subunit alphaD5I55_17105Not AvailableNegative3506219 - 350716033554.6
tyrosine recombinaseD5I55_17110Not AvailableNegative3507172 - 350807733083.8
hypothetical proteinD5I55_17115Not AvailableNegative3508079 - 350967156221.5
shikimate kinaseD5I55_17120Not AvailablePositive3510126 - 351066219367.4
3-dehydroquinate synthaseD5I55_17125Not AvailablePositive3510659 - 351175638566.6
duf423 domain-containing proteinD5I55_17130Not AvailableNegative3511753 - 351207611066.8
sodium:proton exchangerD5I55_17135Not AvailableNegative3512076 - 351381261386.8
iron-sulfur cluster assembly scaffold proteinD5I55_17140Not AvailableNegative3513805 - 351423614927.8
cvpa family proteinD5I55_17145Not AvailableNegative3514238 - 351473817439.7
dna repair protein radaD5I55_17150Not AvailableNegative3514748 - 351612148094.8

Displaying genes 3371 – 3380 of 3541 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.