Escherichia coli strain 12-246M UB12-246M1_c978

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain 12-246M (UB12-246M1_c978) is a gram-negative bacterium that exhibits a rod shape and is classified as a facultative anaerobe, capable of thriving in both aerobic and anaerobic environments. This strain is motile, possessing flagella that allow for movement. It is adapted to a mesophilic temperature range, with an optimal growth temperature of 37°C. E. coli strain 12-246M is host-associated, exhibiting a free-living biotic relationship while also being adaptable to a wide range of hosts. It has been identified in various organisms including Homo sapiens, Gallus gallus, Bos taurus, and several others across multiple taxa such as mammals and birds. This strain is associated with numerous health effects, particularly in humans, where it can cause urinary tract infections (UTIs), gastrointestinal infections, neonatal meningitis, and even more severe conditions like septicemia and hemolytic uremic syndrome (HUS). The pathogenicity of E. coli strain 12-246M primarily affects humans, leading to a variety of clinical manifestations such as diarrhea, abdominal pain, and, in some cases, severe complications like renal failure and cardiovascular diseases. The diversity of hosts indicates a complex ecological role, potentially contributing to the dynamics of microbial populations in various environments. Furthermore, the strain's association with both human and animal health highlights its significance in understanding zoonotic transmission and the epidemiology of infectious diseases.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain 12-246M UB12-246M1_c978

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain 12-246M UB12-246M1_c978
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain 12-246M UB12-246M1_c978, whole genome

Gene Summary

Adenine Count

1362129 bp

Thymine Count

1372700 bp

Guanine Count

1386795 bp

Cytosine Count

1373563 bp

Genome Length

5495193 bp

Protein-coding Genes

5455 genes

Non-Coding Genes

660 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Gene 59 proteinD3821_00845Not AvailableNegative170459 - 17097719694.2
Gene 58 proteinD3821_00850Not AvailableNegative170968 - 1711898099.68
Replication protein pD3821_00855Not AvailableNegative171186 - 17153913198.7
Replication protein oD3821_00860Not AvailableNegative171514 - 17240433984.4
RepressorD3821_00865Not AvailableNegative172585 - 17288110902.2
Regulatory protein cro (antirepressor)D3821_00870Not AvailableNegative172997 - 1731826801.09
Repressor protein c2D3821_00875Not AvailablePositive173263 - 17391324038.9
Transcription antitermination protein nD3821_00880Not AvailablePositive174228 - 1745009845.09
Single-stranded dna binding proteinD3821_00885Not AvailablePositive174680 - 17500912181.4
ExonucleaseD3821_00890Not AvailablePositive175018 - 17556620680.5

Displaying genes 31 – 40 of 6115 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total