Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 12-246M UB12-246M1_c978 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1362129 bp
Thymine Count
1372700 bp
Guanine Count
1386795 bp
Cytosine Count
1373563 bp
Genome Length
5495193 bp
Protein-coding Genes
5455 genes
Non-Coding Genes
660 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nickel-binding periplasmic protein | D3821_03995 | Not Available | Positive | 827994 - 829568 | 58722.1 |
| nickel abc transporter permease subunit nikb | D3821_04000 | Not Available | Positive | 829568 - 830512 | 35250.3 |
| nickel abc transporter permease subunit nikc | D3821_04005 | Not Available | Positive | 830509 - 831342 | 30363.8 |
| nickel import atp-binding protein nikd | D3821_04010 | Not Available | Positive | 831342 - 832106 | 26822.1 |
| nickel import atp-binding protein nike | D3821_04015 | Not Available | Positive | 832103 - 832909 | 29723.5 |
| nickel-responsive transcriptional regulator nikr | D3821_04020 | Not Available | Positive | 832915 - 833316 | 15094.7 |
| hypothetical protein | D3821_04025 | Not Available | Positive | 833519 - 834716 | 43938.8 |
| rhs repeat protein | D3821_04030 | Not Available | Negative | 834717 - 836820 | 78116.6 |
| type vi secretion system tip protein vgrg | D3821_04035 | Not Available | Negative | 836745 - 837410 | 25618.3 |
| hypothetical protein | D3821_04040 | Not Available | Negative | 838230 - 838442 | 8270.6 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




