Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Attr | Not Available | Not Available | Positive | 1787040 - 1787051 | Not Available |
| Attl | Not Available | Not Available | Positive | 2831957 - 2832015 | Not Available |
| site-specific integrase | D5071_12905 | Not Available | Negative | 2840982 - 2842205 | 45212.4 |
| site-specific integrase | D5071_12910 | Not Available | Negative | 2842534 - 2843880 | 52045.2 |
| Attr | Not Available | Not Available | Positive | 2844024 - 2844082 | Not Available |
| hypothetical protein | D5071_12915 | Not Available | Negative | 2844328 - 2844738 | 15733.0 |
| Phage assembly protein | D5071_12920 | Not Available | Negative | 2844747 - 2845019 | 9954.1 |
| Assembly protein | D5071_12925 | Not Available | Negative | 2845062 - 2846120 | 40451.9 |
| Minor coat protein | D5071_12930 | Not Available | Negative | 2846122 - 2846463 | 12313.8 |
| Attachment protein | D5071_12935 | Not Available | Negative | 2846466 - 2847653 | 42709.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
