Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-binding protein ybib | D5071_04655 | Not Available | Positive | 991723 - 992691 | 35020.3 |
| peptidase m3 | D5071_04660 | Not Available | Positive | 992777 - 994645 | 70817.9 |
| glutamine abc transporter atp-binding protein glnq | D5071_04665 | Not Available | Negative | 994697 - 995419 | 26519.2 |
| glutamine abc transporter permease glnp | D5071_04670 | Not Available | Negative | 995416 - 996075 | 24085.5 |
| glutamine abc transporter substrate-binding protein glnh | D5071_04675 | Not Available | Negative | 996102 - 996848 | 27270.8 |
| dna starvation/stationary phase protection protein dps | D5071_04680 | Not Available | Negative | 997245 - 997748 | 18484.2 |
| threonine/homoserine exporter rhta | D5071_04690 | Not Available | Negative | 998633 - 999520 | 31285.6 |
| outer membrane protein ompx | D5071_04695 | Not Available | Positive | 999897 - 1000412 | 18294.2 |
| mfs transporter | D5071_04700 | Not Available | Positive | 1000689 - 1001858 | 41291.2 |
| emmdr/yeeo family multidrug/toxin efflux mate transporter | D5071_04705 | Not Available | Negative | 1001903 - 1003303 | 50929.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
