Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| antar domain-containing protein | D5071_04250 | Not Available | Positive | 904646 - 905923 | 47946.6 |
| nitrate abc transporter substrate-binding protein | D5071_04260 | Not Available | Positive | 906856 - 908115 | 45602.4 |
| nitrate abc transporter, permease protein | D5071_04265 | Not Available | Positive | 908128 - 909042 | 33265.5 |
| abc transporter atp-binding protein | D5071_04270 | Not Available | Positive | 909053 - 909847 | 29568.0 |
| nitrite reductase (nad(p)h) small subunit | D5071_04275 | Not Available | Positive | 909867 - 914054 | 151175.0 |
| nitrate reductase | D5071_04280 | Not Available | Positive | 914051 - 916759 | 98344.0 |
| uroporphyrinogen-iii c-methyltransferase | D5071_04285 | Not Available | Positive | 916785 - 917618 | 29805.3 |
| duf1456 family protein | D5071_04295 | Not Available | Negative | 918154 - 918618 | 17814.9 |
| arsr family transcriptional regulator | D5071_04300 | Not Available | Negative | 918780 - 919085 | 11488.9 |
| nadh:flavin oxidoreductase/nadh oxidase | D5071_04305 | Not Available | Positive | 919189 - 920277 | 39825.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
