Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acetate kinase | D5071_03985 | Not Available | Negative | 842394 - 843596 | 43587.3 |
| duf412 domain-containing protein | D5071_03990 | Not Available | Positive | 844039 - 844494 | 17084.9 |
| yfbu family protein | D5071_03995 | Not Available | Positive | 844660 - 845154 | 19484.5 |
| sugar phosphatase | D5071_04000 | Not Available | Positive | 845176 - 845832 | 23543.3 |
| hypothetical protein | D5071_04005 | Not Available | Positive | 845901 - 846158 | 9426.37 |
| slc13 family permease | D5071_04010 | Not Available | Positive | 846155 - 847987 | 66379.7 |
| 5'-deoxynucleotidase | D5071_04015 | Not Available | Negative | 848017 - 848616 | 22937.6 |
| pyridoxal phosphate-dependent aminotransferase | D5071_04020 | Not Available | Negative | 848759 - 849973 | 45490.9 |
| transcriptional regulator lrha | D5071_04025 | Not Available | Positive | 850475 - 851425 | 34828.2 |
| nadh-quinone oxidoreductase subunit a | D5071_04030 | Not Available | Positive | 852103 - 852543 | 16157.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
