Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| histidine abc transporter permease hisq | D5071_03930 | Not Available | Positive | 832588 - 833277 | 24889.0 |
| histidine abc transporter permease hism | D5071_03935 | Not Available | Positive | 833270 - 833986 | 26923.3 |
| histidine abc transporter atp-binding protein hisp | D5071_03940 | Not Available | Positive | 834003 - 834776 | 28706.9 |
| tigr01777 family protein | D5071_03950 | Not Available | Negative | 835143 - 836048 | 32918.9 |
| dihydroneopterin triphosphate 2'-epimerase | D5071_03955 | Not Available | Negative | 836271 - 836642 | 14378.2 |
| gsh-dependent disulfide bond oxidoreductase | D5071_03960 | Not Available | Negative | 836768 - 837394 | 24027.5 |
| phosphodiesterase | D5071_03965 | Not Available | Positive | 837657 - 838208 | 20430.5 |
| nudix hydrolase yfcd | D5071_03970 | Not Available | Positive | 838456 - 839124 | 24739.5 |
| duf817 domain-containing protein | D5071_03975 | Not Available | Negative | 839196 - 840056 | 33252.0 |
| phosphate acetyltransferase | D5071_03980 | Not Available | Negative | 840176 - 842314 | 77101.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
