Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| chorismate synthase | D5071_03825 | Not Available | Positive | 811087 - 812172 | 39156.7 |
| penicillin-insensitive murein endopeptidase | D5071_03830 | Not Available | Positive | 812179 - 813024 | 31094.3 |
| hypothetical protein | D5071_03835 | Not Available | Positive | 813034 - 813834 | 28246.4 |
| elongation factor p hydroxylase | D5071_03840 | Not Available | Positive | 813862 - 814407 | 20841.2 |
| yfcl family protein | D5071_03845 | Not Available | Positive | 814441 - 814725 | 10481.2 |
| bifunctional trna (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase mnmd/fad-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase mnmc | D5071_03850 | Not Available | Negative | 814793 - 816820 | 74782.4 |
| beta-ketoacyl-acp synthase i | D5071_03855 | Not Available | Positive | 816994 - 818211 | 42995.3 |
| flagella biosynthesis regulator flk | D5071_03860 | Not Available | Negative | 818327 - 819586 | 45150.9 |
| dmt family transporter | D5071_03865 | Not Available | Negative | 819692 - 820663 | 35174.8 |
| 4-phosphoerythronate dehydrogenase pdxb | D5071_03870 | Not Available | Positive | 820855 - 821991 | 41208.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
