Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| major outer membrane lipoprotein | D5071_03255 | Not Available | Positive | 685698 - 685934 | 8401.95 |
| l,d-transpeptidase | D5071_03260 | Not Available | Negative | 686112 - 687134 | 36707.4 |
| cysteine desulfuration protein sufe | D5071_03265 | Not Available | Negative | 687612 - 688028 | 15482.5 |
| cysteine desulfurase sufs | D5071_03270 | Not Available | Negative | 688062 - 689285 | 44355.2 |
| fe-s cluster assembly protein sufd | D5071_03275 | Not Available | Negative | 689285 - 690631 | 49196.9 |
| fe-s cluster assembly atpase sufc | D5071_03280 | Not Available | Negative | 690606 - 691352 | 27686.0 |
| fe-s cluster assembly protein sufb | D5071_03285 | Not Available | Negative | 691449 - 692948 | 55402.9 |
| fe-s cluster assembly scaffold sufa | D5071_03290 | Not Available | Negative | 692962 - 693333 | 13624.2 |
| hypothetical protein | D5071_03295 | Not Available | Positive | 693760 - 694161 | 15759.9 |
| 1,4-dihydroxy-2-naphthoyl-coa hydrolase | D5071_03300 | Not Available | Negative | 694225 - 694641 | 15343.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
