Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytochrome c maturation protein ccme | D5071_03155 | Not Available | Negative | 664143 - 664625 | 17383.8 |
| heme exporter protein ccmd | D5071_03160 | Not Available | Negative | 664622 - 664843 | 8405.21 |
| heme abc transporter permease | D5071_03165 | Not Available | Negative | 664840 - 665580 | 27430.6 |
| heme exporter protein ccmb | D5071_03170 | Not Available | Negative | 665649 - 666305 | 23312.9 |
| cytochrome c biogenesis heme-transporting atpase ccma | D5071_03175 | Not Available | Negative | 666293 - 666925 | 23193.1 |
| heme lyase nrfefg subunit nrfg | D5071_03180 | Not Available | Negative | 667128 - 667988 | 31715.6 |
| heme lyase nrfefg subunit nrff | D5071_03185 | Not Available | Negative | 667985 - 668386 | 15159.8 |
| heme lyase ccmf/nrfe family subunit | D5071_03190 | Not Available | Negative | 668379 - 670253 | 68895.5 |
| cytochrome c nitrite reductase subunit nrfd | D5071_03195 | Not Available | Negative | 670275 - 671237 | 35538.8 |
| cytochrome c nitrite reductase fe-s protein | D5071_03200 | Not Available | Negative | 671234 - 671905 | 24691.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
