Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| had-iib family hydrolase | D5071_03055 | Not Available | Negative | 644927 - 645718 | 29160.8 |
| qace family quaternary ammonium compound efflux smr transporter | D5071_03060 | Not Available | Negative | 646163 - 646477 | 10937.0 |
| Trna-val | Not Available | Not Available | Positive | 646823 - 646899 | Not Available |
| hypothetical protein | D5071_03070 | Not Available | Negative | 647232 - 647654 | 15837.9 |
| hypothetical protein | D5071_03075 | Not Available | Negative | 647840 - 648565 | 27564.8 |
| lysr family transcriptional regulator | D5071_03080 | Not Available | Negative | 648863 - 649750 | 32044.9 |
| aec family transporter | D5071_03085 | Not Available | Positive | 649889 - 650851 | 33733.4 |
| nitrate/nitrite response regulator protein narp | D5071_03090 | Not Available | Negative | 650920 - 651552 | 23288.2 |
| nitrate/nitrite two-component system sensor histidine kinase narq | D5071_03095 | Not Available | Negative | 651639 - 653357 | 65365.2 |
| ferredoxin-type protein napf | D5071_03100 | Not Available | Positive | 653608 - 654144 | 19154.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
