Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hamp domain-containing protein | D5071_02800 | Not Available | Negative | 586256 - 588190 | 69687.5 |
| response regulator | D5071_02805 | Not Available | Negative | 588655 - 589356 | 26485.8 |
| sensor histidine kinase | D5071_02810 | Not Available | Negative | 589448 - 591043 | 59392.3 |
| malate permease | D5071_02815 | Not Available | Positive | 591463 - 592833 | 47966.4 |
| faa hydrolase family protein | D5071_02820 | Not Available | Positive | 592949 - 593833 | 31916.8 |
| [citrate (pro-3s)-lyase] ligase | D5071_02825 | Not Available | Positive | 593921 - 594985 | 40339.5 |
| citrate lyase acp | D5071_02830 | Not Available | Positive | 595009 - 595299 | 10462.7 |
| citrate (pro-3s)-lyase subunit beta | D5071_02835 | Not Available | Positive | 595299 - 596174 | 32016.6 |
| citrate lyase subunit alpha | D5071_02840 | Not Available | Positive | 596228 - 597757 | 55024.0 |
| citrate lyase holo-[acyl-carrier protein] synthase | D5071_02845 | Not Available | Positive | 597784 - 598311 | 19408.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
