Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| imidazole glycerol phosphate synthase subunit hisf | D5071_02750 | Not Available | Negative | 576058 - 576834 | 28446.0 |
| 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase | D5071_02755 | Not Available | Negative | 576816 - 577553 | 26352.5 |
| imidazole glycerol phosphate synthase subunit hish | D5071_02760 | Not Available | Negative | 577560 - 578150 | 21313.9 |
| bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase hisb | D5071_02765 | Not Available | Negative | 578150 - 579217 | 39751.6 |
| histidinol-phosphate transaminase | D5071_02770 | Not Available | Negative | 579233 - 580306 | 39350.3 |
| histidinol dehydrogenase | D5071_02775 | Not Available | Negative | 580303 - 581631 | 46684.5 |
| atp phosphoribosyltransferase | D5071_02780 | Not Available | Negative | 581637 - 582536 | 33552.1 |
| his operon leader peptide | D5071_02785 | Not Available | Negative | 582683 - 582730 | 1915.24 |
| sdr family oxidoreductase | D5071_02790 | Not Available | Positive | 583012 - 583848 | 30104.0 |
| hamp domain-containing protein | D5071_02795 | Not Available | Negative | 583951 - 585903 | 70411.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
