Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pyruvate formate lyase 1-activating protein | D5071_02700 | Not Available | Negative | 563017 - 563757 | 28144.8 |
| formate c-acetyltransferase | D5071_02705 | Not Available | Negative | 564027 - 566309 | 84889.1 |
| formate transporter foca | D5071_02710 | Not Available | Negative | 566367 - 567224 | 30796.5 |
| 30s ribosomal protein s12 methylthiotransferase accessory factor ycao | D5071_02715 | Not Available | Negative | 567663 - 569426 | 65704.9 |
| 3-phosphoserine/phosphohydroxythreonine transaminase | D5071_02720 | Not Available | Positive | 569756 - 570841 | 40247.1 |
| 3-phosphoshikimate 1-carboxyvinyltransferase | D5071_02725 | Not Available | Positive | 570923 - 572212 | 46653.1 |
| (d)cmp kinase | D5071_02730 | Not Available | Positive | 572434 - 573111 | 24454.4 |
| 30s ribosomal protein s1 | D5071_02735 | Not Available | Positive | 573228 - 574901 | 61182.6 |
| integration host factor subunit beta | D5071_02740 | Not Available | Positive | 574991 - 575275 | 10581.7 |
| bifunctional phosphoribosyl-amp cyclohydrolase/phosphoribosyl-atp diphosphatase hisie | D5071_02745 | Not Available | Negative | 575432 - 576064 | 23351.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
