Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cold shock-like protein cspd | D5071_02595 | Not Available | Negative | 536572 - 536793 | 7886.34 |
| atp-dependent clp protease adaptor clps | D5071_02605 | Not Available | Positive | 537215 - 537535 | 12164.4 |
| atp-dependent clp protease atp-binding subunit clpa | D5071_02610 | Not Available | Positive | 537565 - 539838 | 84134.7 |
| carboxymuconolactone decarboxylase family protein | D5071_02615 | Not Available | Positive | 540075 - 540554 | 18133.8 |
| plp-dependent aminotransferase family protein | D5071_02620 | Not Available | Negative | 540555 - 542000 | 52991.8 |
| translation initiation factor if-1 | D5071_02625 | Not Available | Negative | 542151 - 542369 | 8236.07 |
| leucyl/phenylalanyl-trna--protein transferase | D5071_02630 | Not Available | Negative | 542482 - 543186 | 26270.3 |
| cysteine/glutathione abc transporter atp-binding protein/permease cydc | D5071_02635 | Not Available | Negative | 543221 - 544960 | 63551.1 |
| cysteine/glutathione abc transporter permease/atp-binding protein cydd | D5071_02640 | Not Available | Negative | 544960 - 546726 | 64878.2 |
| thioredoxin-disulfide reductase | D5071_02645 | Not Available | Negative | 546964 - 547926 | 34469.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
