Pectobacterium carotovorum strain S1.15.11.2D

BacilliMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Pectobacteriaceae

Genus

Pectobacterium

Description

Pectobacterium carotovorum strain S1.15.11.2D is a Gram-negative, facultative anaerobic bacterium characterized by its bacilli shape and mobility, attributed to the presence of flagella. It falls within the mesophilic temperature range, indicating that it thrives in moderate temperature conditions. This strain is free-living and exhibits a biotic relationship with various hosts, including species from the Viridiplantae kingdom such as Solanum tuberosum (potato), Daucus carota (carrot), Beta vulgaris subsp. vulgaris (beet), and Brassica oleracea var. italica (broccoli). Pectobacterium carotovorum is notably associated with plant diseases, causing soft rot and potato blackleg and soft rot, which can significantly impact agricultural productivity and food supply. The strain has a single replicon, which is relevant for its genetic stability and replication characteristics. The accession number for this strain is QZDH00000000.1, providing a reference for further genetic and genomic studies. In terms of ecological impact, Pectobacterium carotovorum strain S1.15.11.2D plays a critical role in the decomposition process of plant material in its environments. By causing soft rot in various crops, it contributes to nutrient cycling and soil health, although it also poses challenges for agricultural practices due to its pathogenicity. Understanding the biology and ecology of this strain is essential for developing management strategies to mitigate its negative effects on crops while appreciating its role in the ecosystem.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyPectobacteriaceae
GenusPectobacterium
SpeciesPectobacterium carotovorum
Strainstrain S1.15.11.2D

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Pectobacterium carotovorum strain S1.15.11.2D
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatNot Available
Biotic relationshipFree living
Host(s)Viridiplantae, Solanum tuberosum, Daucus carota
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pectobacterium carotovorum strain S1.15.11.2D contig_91, whole

Gene Summary

Adenine Count

1180518 bp

Thymine Count

1171732 bp

Guanine Count

1226236 bp

Cytosine Count

1240350 bp

Genome Length

4818836 bp

Protein-coding Genes

4141 genes

Non-Coding Genes

122 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
bcr/cfla family drug resistance efflux transporterD5071_02240Not AvailablePositive460393 - 46158343194.3
hypothetical proteinD5071_02245Not AvailablePositive461967 - 46231112877.4
microcin c abc transporter atp-binding protein yejfD5071_02250Not AvailableNegative462352 - 46396860047.9
abc transporter permease subunitD5071_02255Not AvailableNegative463970 - 46499538231.7
microcin c abc transporter permease yejbD5071_02260Not AvailableNegative464992 - 46608940665.1
abc transporter substrate-binding proteinD5071_02265Not AvailableNegative466099 - 46790769159.7
bifunctional murein dd-endopeptidase/murein ld-carboxypeptidaseD5071_02270Not AvailableNegative468372 - 46895321781.0
hypothetical proteinD5071_02275Not AvailablePositive469026 - 4692237651.15
phosphatase pap2 family proteinD5071_02280Not AvailableNegative469266 - 46997626443.8
gtp-binding proteinD5071_02285Not AvailableNegative470015 - 47101636787.1

Displaying genes 541 – 550 of 4263 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Soft rotCausesPMC11149725
Potato blacklegCausesPMC11677604
Potato soft rotCausesPMC5376619

Displaying health effects 1 – 3 of 3 in total