Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-directed rna polymerase subunit omega | D5071_01785 | Not Available | Positive | 368509 - 368784 | 10269.2 |
| bifunctional gtp diphosphokinase/guanosine-3',5'-bis(diphosphate) 3'-diphosphatase | D5071_01790 | Not Available | Positive | 368803 - 370902 | 79080.1 |
| trna (guanosine(18)-2'-o)-methyltransferase trmh | D5071_01795 | Not Available | Positive | 370908 - 371600 | 25728.0 |
| atp-dependent dna helicase recg | D5071_01800 | Not Available | Positive | 371600 - 373681 | 76661.8 |
| uracil-xanthine permease | D5071_01805 | Not Available | Positive | 373848 - 375236 | 48890.1 |
| asma family protein | D5071_01810 | Not Available | Positive | 375394 - 377085 | 62298.7 |
| aspartate racemase | D5071_01815 | Not Available | Negative | 377164 - 377361 | 7280.94 |
| ktsc domain-containing protein | D5071_01820 | Not Available | Negative | 377939 - 378157 | 8498.28 |
| diguanylate cyclase | D5071_01825 | Not Available | Negative | 378433 - 379848 | 53421.4 |
| protein dsrb | D5071_01830 | Not Available | Positive | 380058 - 380261 | 7613.14 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
