Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| energy transducer tonb | D5071_01680 | Not Available | Negative | 342977 - 343798 | 29344.3 |
| duf4880 domain-containing protein | D5071_01685 | Not Available | Negative | 344000 - 344989 | 36726.4 |
| sigma-70 family rna polymerase sigma factor | D5071_01690 | Not Available | Negative | 344986 - 345498 | 19612.8 |
| tonb-dependent receptor | D5071_01695 | Not Available | Negative | 345678 - 348227 | 92172.7 |
| oligopeptidase a | D5071_01700 | Not Available | Positive | 348549 - 350591 | 76662.4 |
| 16s rrna (guanine(1516)-n(2))-methyltransferase rsmj | D5071_01705 | Not Available | Positive | 350588 - 351334 | 26894.8 |
| hypothetical protein | D5071_01710 | Not Available | Negative | 351552 - 352718 | 41651.9 |
| fad-dependent oxidoreductase | D5071_01720 | Not Available | Negative | 353281 - 354594 | 47777.0 |
| nadp-specific glutamate dehydrogenase | D5071_01725 | Not Available | Negative | 354769 - 356112 | 48147.7 |
| universal stress protein uspa | D5071_01730 | Not Available | Negative | 356404 - 356841 | 16101.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
