Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| n-acetylmuramoyl-l-alanine amidase amib | D5071_21760 | Not Available | Negative | 4785275 - 4786948 | 59542.1 |
| trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex atpase subunit type 1 tsae | D5071_21765 | Not Available | Negative | 4786945 - 4787427 | 17457.8 |
| hypothetical protein | D5071_21770 | Not Available | Negative | 4787490 - 4787744 | 9293.22 |
| alkyl hydroperoxide reductase subunit c | D5071_21775 | Not Available | Positive | 4788070 - 4788633 | 20842.6 |
| alkyl hydroperoxide reductase subunit f | D5071_21780 | Not Available | Positive | 4788763 - 4790325 | 55861.9 |
| trna epoxyqueuosine(34) reductase queg | D5071_21785 | Not Available | Negative | 4790855 - 4791994 | 43286.3 |
| acyl carrier protein | D5071_21790 | Not Available | Negative | 4792120 - 4792374 | 9224.48 |
| hypothetical protein | D5071_21795 | Not Available | Negative | 4792428 - 4792889 | 17360.1 |
| atp-binding protein | D5071_21800 | Not Available | Positive | 4792916 - 4794667 | 64699.0 |
| hnh endonuclease | D5071_21805 | Not Available | Negative | 4794915 - 4795145 | 9057.87 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
