Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutamate--cysteine ligase | D5071_21140 | Not Available | Negative | 4645023 - 4646576 | 58352.5 |
| deda family protein | D5071_21145 | Not Available | Negative | 4646659 - 4647087 | 15461.4 |
| fructose-1-phosphate/6-phosphogluconate phosphatase | D5071_21150 | Not Available | Negative | 4647084 - 4647650 | 21005.1 |
| oligoribonuclease | D5071_21155 | Not Available | Negative | 4648300 - 4648842 | 20672.6 |
| small ribosomal subunit biogenesis gtpase rsga | D5071_21160 | Not Available | Positive | 4649026 - 4650075 | 38976.5 |
| phosphatidylserine decarboxylase | D5071_21165 | Not Available | Positive | 4650248 - 4651276 | 37657.2 |
| miniconductance mechanosensitive channel mscm | D5071_21170 | Not Available | Positive | 4651332 - 4654655 | 124057.0 |
| elongation factor p--(r)-beta-lysine ligase | D5071_21175 | Not Available | Negative | 4654707 - 4655684 | 36736.8 |
| fumarate reductase (quinol) flavoprotein subunit | D5071_21180 | Not Available | Positive | 4656162 - 4657958 | 66065.7 |
| succinate dehydrogenase/fumarate reductase iron-sulfur subunit | D5071_21185 | Not Available | Positive | 4657951 - 4658688 | 27472.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
