Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf2799 domain-containing protein | D5071_21085 | Not Available | Positive | 4635972 - 4636319 | 12828.9 |
| class i sam-dependent methyltransferase | D5071_21090 | Not Available | Positive | 4636582 - 4637520 | 34986.8 |
| is3 family transposase | D5071_21095 | Not Available | Positive | 4637737 - 4639094 | 52226.0 |
| 50s ribosomal protein l19 | D5071_21105 | Not Available | Negative | 4639782 - 4640129 | 13105.0 |
| trna (guanosine(37)-n1)-methyltransferase trmd | D5071_21110 | Not Available | Negative | 4640192 - 4640947 | 28348.0 |
| ribosome maturation factor rimm | D5071_21115 | Not Available | Negative | 4640986 - 4641534 | 20437.4 |
| 30s ribosomal protein s16 | D5071_21120 | Not Available | Negative | 4641553 - 4641801 | 9084.99 |
| signal recognition particle protein | D5071_21125 | Not Available | Negative | 4641959 - 4643320 | 50068.8 |
| inner membrane protein ypjd | D5071_21130 | Not Available | Positive | 4643491 - 4644285 | 29700.4 |
| s-ribosylhomocysteine lyase | D5071_21135 | Not Available | Negative | 4644354 - 4644869 | 19294.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
