Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf3053 domain-containing protein | D5071_01520 | Not Available | Negative | 308543 - 309247 | 25933.1 |
| glycine--trna ligase subunit beta | D5071_01525 | Not Available | Negative | 309588 - 311657 | 76196.2 |
| glycine--trna ligase subunit alpha | D5071_01530 | Not Available | Negative | 311667 - 312581 | 34788.4 |
| sulfite exporter taue/safe family protein | D5071_01535 | Not Available | Negative | 312709 - 313515 | 27686.9 |
| dna-3-methyladenine glycosylase i | D5071_01540 | Not Available | Positive | 313803 - 314366 | 21515.5 |
| n-acetyltransferase | D5071_01545 | Not Available | Positive | 314363 - 314836 | 18007.3 |
| hamp domain-containing protein | D5071_01550 | Not Available | Negative | 314857 - 316818 | 70700.4 |
| glyoxylate/hydroxypyruvate reductase ghrb | D5071_01555 | Not Available | Positive | 317159 - 318121 | 34595.8 |
| tigr04028 family abc transporter substrate-binding protein | D5071_01560 | Not Available | Positive | 318424 - 320061 | 59489.5 |
| abc transporter permease | D5071_01565 | Not Available | Positive | 320089 - 321033 | 33701.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
